Reactivity of sulfur compounds

Jmol._Canvas2D (Jmol) "jmolApplet1"[x] script 1 started FileManager.getAtomSetCollectionFromFile(mols/dimetilsulfuro.hin) FileManager opening url http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/mols/dimetilsulfuro.hin The Resolver thinks HyperChem loadScript ../../jsmol/j2s/J/adapter/readers/simple/HyperChemReader.js JSmol exec jmolApplet2 start applet null Jmol JavaScript applet jmolApplet2__726894425923402__ initializing Jmol getValue debug null Jmol getValue logLevel null Jmol getValue allowjavascript null AppletRegistry.checkIn(jmolApplet2__726894425923402__) vwrOptions: { "name":"jmolApplet2","applet":true,"documentBase":"http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/index.html","platform":"J.awtjs2d.Platform","fullName":"jmolApplet2__726894425923402__","codePath":"http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/../../jsmol/j2s/","display":"jmolApplet2_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"726894425923402","bgcolor":"#0000000" } setting document base to "http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/index.html" (C) 2015 Jmol Development Jmol Version: 14.6.4_2016.11.05 2016-11-05 10:17 java.vendor: Java2Script (HTML5) java.version: 2016-10-21 06:39:01 (JSmol/j2s) os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com) Access: ALL memory: 0.0/0.0 processors available: 1 useCommandThread: false appletId:jmolApplet2 (signed) Jmol getValue emulate null defaults = "Jmol" Jmol getValue boxbgcolor null Jmol getValue bgcolor #0000000 backgroundColor = "#0000000" Jmol getValue ANIMFRAMECallback null Jmol getValue APPLETREADYCallback Jmol._readyCallback APPLETREADYCallback = "Jmol._readyCallback" callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY Jmol getValue ATOMMOVEDCallback null Jmol getValue CLICKCallback null Jmol getValue DRAGDROPCallback null Jmol getValue ECHOCallback null Jmol getValue ERRORCallback null Jmol getValue EVALCallback null Jmol getValue HOVERCallback null Jmol getValue IMAGECallback null Jmol getValue LOADSTRUCTCallback null Jmol getValue MEASURECallback null Jmol getValue MESSAGECallback null Jmol getValue MINIMIZATIONCallback null Jmol getValue SERVICECallback null Jmol getValue PICKCallback null Jmol getValue RESIZECallback null Jmol getValue SCRIPTCallback null Jmol getValue SYNCCallback null Jmol getValue STRUCTUREMODIFIEDCallback null Jmol getValue doTranslate null language=en_US Jmol getValue popupMenu null Jmol getValue script null Jmol getValue loadInline null Jmol getValue load null Jmol applet jmolApplet2__726894425923402__ ready	Jmol._Canvas2D (Jmol) "jmolApplet2"[x] script 1 started FileManager.getAtomSetCollectionFromFile(mols/dimetilsulfoxido.hin) FileManager opening url http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/mols/dimetilsulfoxido.hin The Resolver thinks HyperChem Time for openFile(mols/dimetilsulfoxido.hin): 152 ms reading 10 atoms ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false 1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them. Default Van der Waals type for model set to Babel 10 atoms created ModelSet: not autobonding; use forceAutobond=true to force automatic bond creation Time for creating model: 7 ms Script completed Jmol script terminated JSmol exec jmolApplet3 start applet null Jmol JavaScript applet jmolApplet3__726894425923402__ initializing Jmol getValue debug null Jmol getValue logLevel null Jmol getValue allowjavascript null AppletRegistry.checkIn(jmolApplet3__726894425923402__) vwrOptions: { "name":"jmolApplet3","applet":true,"documentBase":"http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/index.html","platform":"J.awtjs2d.Platform","fullName":"jmolApplet3__726894425923402__","codePath":"http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/../../jsmol/j2s/","display":"jmolApplet3_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"726894425923402","bgcolor":"#0000000" } setting document base to "http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/index.html" (C) 2015 Jmol Development Jmol Version: 14.6.4_2016.11.05 2016-11-05 10:17 java.vendor: Java2Script (HTML5) java.version: 2016-10-21 06:39:01 (JSmol/j2s) os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com) Access: ALL memory: 0.0/0.0 processors available: 1 useCommandThread: false appletId:jmolApplet3 (signed) Jmol getValue emulate null defaults = "Jmol" Jmol getValue boxbgcolor null Jmol getValue bgcolor #0000000 backgroundColor = "#0000000" Jmol getValue ANIMFRAMECallback null Jmol getValue APPLETREADYCallback Jmol._readyCallback APPLETREADYCallback = "Jmol._readyCallback" callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY Jmol getValue ATOMMOVEDCallback null Jmol getValue CLICKCallback null Jmol getValue DRAGDROPCallback null Jmol getValue ECHOCallback null Jmol getValue ERRORCallback null Jmol getValue EVALCallback null Jmol getValue HOVERCallback null Jmol getValue IMAGECallback null Jmol getValue LOADSTRUCTCallback null Jmol getValue MEASURECallback null Jmol getValue MESSAGECallback null Jmol getValue MINIMIZATIONCallback null Jmol getValue SERVICECallback null Jmol getValue PICKCallback null Jmol getValue RESIZECallback null Jmol getValue SCRIPTCallback null Jmol getValue SYNCCallback null Jmol getValue STRUCTUREMODIFIEDCallback null Jmol getValue doTranslate null language=en_US Jmol getValue popupMenu null Jmol getValue script null Jmol getValue loadInline null Jmol getValue load null Jmol applet jmolApplet3__726894425923402__ ready	Jmol._Canvas2D (Jmol) "jmolApplet3"[x] script 1 started FileManager.getAtomSetCollectionFromFile(mols/dimetilsulfona.hin) FileManager opening url http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/mols/dimetilsulfona.hin The Resolver thinks HyperChem Time for openFile(mols/dimetilsulfona.hin): 129 ms reading 11 atoms ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false 1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them. Default Van der Waals type for model set to Babel 11 atoms created ModelSet: not autobonding; use forceAutobond=true to force automatic bond creation Time for creating model: 2 ms Script completed Jmol script terminated JSmol exec jmolApplet4 start applet null Jmol JavaScript applet jmolApplet4__726894425923402__ initializing Jmol getValue debug null Jmol getValue logLevel null Jmol getValue allowjavascript null AppletRegistry.checkIn(jmolApplet4__726894425923402__) vwrOptions: { "name":"jmolApplet4","applet":true,"documentBase":"http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/index.html","platform":"J.awtjs2d.Platform","fullName":"jmolApplet4__726894425923402__","codePath":"http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/../../jsmol/j2s/","display":"jmolApplet4_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"726894425923402","bgcolor":"#0000000" } setting document base to "http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/index.html" (C) 2015 Jmol Development Jmol Version: 14.6.4_2016.11.05 2016-11-05 10:17 java.vendor: Java2Script (HTML5) java.version: 2016-10-21 06:39:01 (JSmol/j2s) os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com) Access: ALL memory: 0.0/0.0 processors available: 1 useCommandThread: false appletId:jmolApplet4 (signed) Jmol getValue emulate null defaults = "Jmol" Jmol getValue boxbgcolor null Jmol getValue bgcolor #0000000 backgroundColor = "#0000000" Jmol getValue ANIMFRAMECallback null Jmol getValue APPLETREADYCallback Jmol._readyCallback APPLETREADYCallback = "Jmol._readyCallback" callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY Jmol getValue ATOMMOVEDCallback null Jmol getValue CLICKCallback null Jmol getValue DRAGDROPCallback null Jmol getValue ECHOCallback null Jmol getValue ERRORCallback null Jmol getValue EVALCallback null Jmol getValue HOVERCallback null Jmol getValue IMAGECallback null Jmol getValue LOADSTRUCTCallback null Jmol getValue MEASURECallback null Jmol getValue MESSAGECallback null Jmol getValue MINIMIZATIONCallback null Jmol getValue SERVICECallback null Jmol getValue PICKCallback null Jmol getValue RESIZECallback null Jmol getValue SCRIPTCallback null Jmol getValue SYNCCallback null Jmol getValue STRUCTUREMODIFIEDCallback null Jmol getValue doTranslate null language=en_US Jmol getValue popupMenu null Jmol getValue script null Jmol getValue loadInline null Jmol getValue load null Jmol applet jmolApplet4__726894425923402__ ready
Dimethylsulfide	Dimethylsulfoxide	Dimethylsulfone

An important reaction of thiols is their relatively easy oxidation to disulfides:

Jmol._Canvas2D (Jmol) "jmolApplet4"[x] script 1 started FileManager.getAtomSetCollectionFromFile(mols/2xmetiltiol.mol) FileManager opening url http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/mols/2xmetiltiol.mol The Resolver thinks Mol -HYPER- 11041723083D Time for openFile(mols/2xmetiltiol.mol): 125 ms reading 12 atoms ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false 1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them. Default Van der Waals type for model set to Babel 12 atoms created ModelSet: not autobonding; use forceAutobond=true to force automatic bond creation Time for creating model: 2 ms Script completed Jmol script terminated JSmol exec jmolApplet5 start applet null Jmol JavaScript applet jmolApplet5__726894425923402__ initializing Jmol getValue debug null Jmol getValue logLevel null Jmol getValue allowjavascript null AppletRegistry.checkIn(jmolApplet5__726894425923402__) vwrOptions: { "name":"jmolApplet5","applet":true,"documentBase":"http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/index.html","platform":"J.awtjs2d.Platform","fullName":"jmolApplet5__726894425923402__","codePath":"http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/../../jsmol/j2s/","display":"jmolApplet5_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"726894425923402","bgcolor":"#0000000" } setting document base to "http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/index.html" (C) 2015 Jmol Development Jmol Version: 14.6.4_2016.11.05 2016-11-05 10:17 java.vendor: Java2Script (HTML5) java.version: 2016-10-21 06:39:01 (JSmol/j2s) os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com) Access: ALL memory: 0.0/0.0 processors available: 1 useCommandThread: false appletId:jmolApplet5 (signed) Jmol getValue emulate null defaults = "Jmol" Jmol getValue boxbgcolor null Jmol getValue bgcolor #0000000 backgroundColor = "#0000000" Jmol getValue ANIMFRAMECallback null Jmol getValue APPLETREADYCallback Jmol._readyCallback APPLETREADYCallback = "Jmol._readyCallback" callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY Jmol getValue ATOMMOVEDCallback null Jmol getValue CLICKCallback null Jmol getValue DRAGDROPCallback null Jmol getValue ECHOCallback null Jmol getValue ERRORCallback null Jmol getValue EVALCallback null Jmol getValue HOVERCallback null Jmol getValue IMAGECallback null Jmol getValue LOADSTRUCTCallback null Jmol getValue MEASURECallback null Jmol getValue MESSAGECallback null Jmol getValue MINIMIZATIONCallback null Jmol getValue SERVICECallback null Jmol getValue PICKCallback null Jmol getValue RESIZECallback null Jmol getValue SCRIPTCallback null Jmol getValue SYNCCallback null Jmol getValue STRUCTUREMODIFIEDCallback null Jmol getValue doTranslate null language=en_US Jmol getValue popupMenu null Jmol getValue script null Jmol getValue loadInline null Jmol getValue load null Jmol applet jmolApplet5__726894425923402__ ready
2 x Methylthiol
Jmol._Canvas2D (Jmol) "jmolApplet5"[x] script 1 started FileManager.getAtomSetCollectionFromFile(mols/dimetildisulfuro.hin) FileManager opening url http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/mols/dimetildisulfuro.hin The Resolver thinks HyperChem Time for openFile(mols/dimetildisulfuro.hin): 145 ms reading 10 atoms ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false 1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them. Default Van der Waals type for model set to Babel 10 atoms created ModelSet: not autobonding; use forceAutobond=true to force automatic bond creation Time for creating model: 2 ms Script completed Jmol script terminated JSmol exec jmolApplet6 start applet null Jmol JavaScript applet jmolApplet6__726894425923402__ initializing Jmol getValue debug null Jmol getValue logLevel null Jmol getValue allowjavascript null AppletRegistry.checkIn(jmolApplet6__726894425923402__) vwrOptions: { "name":"jmolApplet6","applet":true,"documentBase":"http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/index.html","platform":"J.awtjs2d.Platform","fullName":"jmolApplet6__726894425923402__","codePath":"http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/../../jsmol/j2s/","display":"jmolApplet6_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"726894425923402","bgcolor":"#0000000" } setting document base to "http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/index.html" (C) 2015 Jmol Development Jmol Version: 14.6.4_2016.11.05 2016-11-05 10:17 java.vendor: Java2Script (HTML5) java.version: 2016-10-21 06:39:01 (JSmol/j2s) os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com) Access: ALL memory: 0.0/0.0 processors available: 1 useCommandThread: false appletId:jmolApplet6 (signed) Jmol getValue emulate null defaults = "Jmol" Jmol getValue boxbgcolor null Jmol getValue bgcolor #0000000 backgroundColor = "#0000000" Jmol getValue ANIMFRAMECallback null Jmol getValue APPLETREADYCallback Jmol._readyCallback APPLETREADYCallback = "Jmol._readyCallback" callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY Jmol getValue ATOMMOVEDCallback null Jmol getValue CLICKCallback null Jmol getValue DRAGDROPCallback null Jmol getValue ECHOCallback null Jmol getValue ERRORCallback null Jmol getValue EVALCallback null Jmol getValue HOVERCallback null Jmol getValue IMAGECallback null Jmol getValue LOADSTRUCTCallback null Jmol getValue MEASURECallback null Jmol getValue MESSAGECallback null Jmol getValue MINIMIZATIONCallback null Jmol getValue SERVICECallback null Jmol getValue PICKCallback null Jmol getValue RESIZECallback null Jmol getValue SCRIPTCallback null Jmol getValue SYNCCallback null Jmol getValue STRUCTUREMODIFIEDCallback null Jmol getValue doTranslate null language=en_US Jmol getValue popupMenu null Jmol getValue script null Jmol getValue loadInline null Jmol getValue load null Jmol applet jmolApplet6__726894425923402__ ready
Dimethyldisulfide

This 'disulfuration' reaction - disulfide formation - is very important in biology.

For instance, the insulin molecule is made out of four polipeptidic chains that are bonded together by disulfide bridges - marked in yellow.

Jmol._Canvas2D (Jmol) "jmolApplet6"[x] loadScript ../../jsmol/j2s/core/package.js loadScript ../../jsmol/j2s/core/corejmol.z.js loadScript ../../jsmol/j2s/core/corescript.z.js JSmol exec jmolApplet1 start applet null Jmol JavaScript applet jmolApplet1__726894425923402__ initializing Jmol getValue debug null Jmol getValue logLevel null Jmol getValue allowjavascript null AppletRegistry.checkIn(jmolApplet1__726894425923402__) vwrOptions: { "name":"jmolApplet1","applet":true,"documentBase":"http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/index.html","platform":"J.awtjs2d.Platform","fullName":"jmolApplet1__726894425923402__","codePath":"http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/../../jsmol/j2s/","display":"jmolApplet1_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"726894425923402","bgcolor":"#0000000" } setting document base to "http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/index.html" (C) 2015 Jmol Development Jmol Version: 14.6.4_2016.11.05 2016-11-05 10:17 java.vendor: Java2Script (HTML5) java.version: 2016-10-21 06:39:01 (JSmol/j2s) os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com) Access: ALL memory: 0.0/0.0 processors available: 1 useCommandThread: false appletId:jmolApplet1 (signed) Jmol getValue emulate null defaults = "Jmol" Jmol getValue boxbgcolor null Jmol getValue bgcolor #0000000 backgroundColor = "#0000000" Jmol getValue ANIMFRAMECallback null Jmol getValue APPLETREADYCallback Jmol._readyCallback APPLETREADYCallback = "Jmol._readyCallback" callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY Jmol getValue ATOMMOVEDCallback null Jmol getValue CLICKCallback null Jmol getValue DRAGDROPCallback null Jmol getValue ECHOCallback null Jmol getValue ERRORCallback null Jmol getValue EVALCallback null Jmol getValue HOVERCallback null Jmol getValue IMAGECallback null Jmol getValue LOADSTRUCTCallback null Jmol getValue MEASURECallback null Jmol getValue MESSAGECallback null Jmol getValue MINIMIZATIONCallback null Jmol getValue SERVICECallback null Jmol getValue PICKCallback null Jmol getValue RESIZECallback null Jmol getValue SCRIPTCallback null Jmol getValue SYNCCallback null Jmol getValue STRUCTUREMODIFIEDCallback null Jmol getValue doTranslate null language=en_US Jmol getValue popupMenu null Jmol getValue script null Jmol getValue loadInline null Jmol getValue load null Jmol applet jmolApplet1__726894425923402__ ready script 1 started FileManager.getAtomSetCollectionFromFile(mols/1trz.pdb) FileManager opening url http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/mols/1trz.pdb The Resolver thinks Pdb loadScript ../../jsmol/j2s/core/corebio.z.js HORMONE 19-NOV-93 1TRZ found biomolecule 1: A, B biomolecule 1: number of transforms: 1 found biomolecule 2: C, D biomolecule 2: number of transforms: 1 found biomolecule 3: A, B, C, D biomolecule 3: number of transforms: 3 found biomolecule 4: A, B found biomolecule 4: C, D biomolecule 4: number of transforms: 6 found biomolecule 5: C, D found biomolecule 5: A, B biomolecule 5: number of transforms: 6 found biomolecule 6: A, B, C, D biomolecule 6: number of transforms: 1 found biomolecule 7: A, B found biomolecule 7: C, D biomolecule 7: number of transforms: 2 found biomolecule 8: C, D biomolecule 8: number of transforms: 3 found biomolecule 9: A, B biomolecule 9: number of transforms: 3 1TRZ Time for openFile(mols/1trz.pdb): 399 ms reading 880 atoms ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false 1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them. Default Van der Waals type for model set to Jmol 880 atoms created ModelSet: autobonding; use autobond=false to not generate bonds automatically Jmol 14.6.4_2016.11.05 2016-11-05 10:17 DSSP analysis for model 1.1 - 1TRZ W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637 We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software, and we thank the CMBI for maintaining it to the extent that it was easy to re-engineer in Java for our purposes. Second generation DSSP 2.0 is used in this analysis. See Int. J. Mol. Sci. 2014, 15, 7841-7864; doi:10.3390/ijms15057841. All bioshapes have been deleted and must be regenerated. Time for creating model: 51 ms HORMONE 19-NOV-93 1TRZ found biomolecule 1: A, B found biomolecule 2: C, D found biomolecule 3: A, B, C, D found biomolecule 4: A, B found biomolecule 4: C, D found biomolecule 5: C, D found biomolecule 5: A, B found biomolecule 6: A, B, C, D found biomolecule 7: A, B found biomolecule 7: C, D found biomolecule 8: C, D found biomolecule 9: A, B 1TRZ Script completed Jmol script terminated Time for openFile(mols/dimetilsulfuro.hin): 1368 ms reading 9 atoms ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false 1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them. Default Van der Waals type for model set to Babel 9 atoms created ModelSet: not autobonding; use forceAutobond=true to force automatic bond creation Time for creating model: 2 ms Script completed Jmol script terminated
Insulin

loadScript ../../jsmol/j2s/core/package.js

loadScript ../../jsmol/j2s/core/corejmol.z.js

loadScript ../../jsmol/j2s/core/corescript.z.js

JSmol exec jmolApplet1 start applet null

Jmol JavaScript applet jmolApplet1__726894425923402__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet1__726894425923402__)

vwrOptions:

{ "name":"jmolApplet1","applet":true,"documentBase":"http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/index.html","platform":"J.awtjs2d.Platform","fullName":"jmolApplet1__726894425923402__","codePath":"http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/../../jsmol/j2s/","display":"jmolApplet1_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"726894425923402","bgcolor":"#0000000" }

setting document base to "http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/index.html"

Jmol Version: 14.6.4_2016.11.05 2016-11-05 10:17

java.vendor: Java2Script (HTML5)

java.version: 2016-10-21 06:39:01 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet1 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #0000000

backgroundColor = "#0000000"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet1__726894425923402__ ready

script 1 started

FileManager.getAtomSetCollectionFromFile(mols/1trz.pdb)

FileManager opening url http://qorganica.qui.uam.es/QOT/T7/reactividad_azufre_e_exported/mols/1trz.pdb

The Resolver thinks Pdb

loadScript ../../jsmol/j2s/core/corebio.z.js

HORMONE 19-NOV-93 1TRZ

found biomolecule 1: A, B

biomolecule 1: number of transforms: 1

found biomolecule 2: C, D

biomolecule 2: number of transforms: 1

found biomolecule 3: A, B, C, D

biomolecule 3: number of transforms: 3

found biomolecule 4: A, B

found biomolecule 4: C, D

biomolecule 4: number of transforms: 6

found biomolecule 5: C, D

found biomolecule 5: A, B

biomolecule 5: number of transforms: 6

found biomolecule 6: A, B, C, D

biomolecule 6: number of transforms: 1

found biomolecule 7: A, B

found biomolecule 7: C, D

biomolecule 7: number of transforms: 2

found biomolecule 8: C, D

biomolecule 8: number of transforms: 3

found biomolecule 9: A, B

biomolecule 9: number of transforms: 3

1TRZ

Time for openFile(mols/1trz.pdb): 399 ms

reading 880 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

880 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Jmol 14.6.4_2016.11.05 2016-11-05 10:17 DSSP analysis for model 1.1 - 1TRZ

W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637

We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,

and we thank the CMBI for maintaining it to the extent that it was easy to

re-engineer in Java for our purposes.

Second generation DSSP 2.0 is used in this analysis. See Int. J. Mol. Sci. 2014, 15, 7841-7864; doi:10.3390/ijms15057841.

All bioshapes have been deleted and must be regenerated.

Time for creating model: 51 ms

HORMONE 19-NOV-93 1TRZ

found biomolecule 1: A, B

found biomolecule 2: C, D

found biomolecule 3: A, B, C, D

found biomolecule 4: A, B

found biomolecule 4: C, D

found biomolecule 5: C, D

found biomolecule 5: A, B

found biomolecule 6: A, B, C, D

found biomolecule 7: A, B

found biomolecule 7: C, D

found biomolecule 8: C, D

found biomolecule 9: A, B

1TRZ

Script completed

Jmol script terminated

Time for openFile(mols/dimetilsulfuro.hin): 1368 ms

reading 9 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Babel

9 atoms created

ModelSet: not autobonding; use forceAutobond=true to force automatic bond creation

Time for creating model: 2 ms

Script completed

Jmol script terminated

Insulin

PREPARATION AND REACTIVITY OF SULFUR COMPOUNDS